Taxonomic meta-omics profiling using universal marker genes
Input
name:type
description
pattern
meta:map
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
input:file
List of output files (more than one) from motus profile,
or a single directory containing motus output files.
db:directory
mOTUs database downloaded by motus downloadDB
pattern: “db_mOTU/”
profile_version_yml:file
A single versions.yml file output from motus/profile. motus/merge cannot reconstruct
this itself without having the motus database present and configured with the tool
so here we take it from what is already reported by the upstream module.
versions.yml
Output
name:type
description
pattern
txt
meta:file
OTU table in txt format, if BIOM format not requested
*.txt
*.txt:file
OTU table in txt format, if BIOM format not requested
*.txt
biom
meta:file
OTU table in biom format, if BIOM format requested
*.biom
*.biom:file
OTU table in biom format, if BIOM format requested
