Description

Aggregate results from bioinformatics analyses across many samples into a single report

Input

Name (Type)
Description
Pattern

multiqc_files (file)

List of reports / files recognised by MultiQC, for example the html and zip output of FastQC

multiqc_config (file)

Optional config yml for MultiQC

*.{yml,yaml}

extra_multiqc_config (file)

Second optional config yml for MultiQC. Will override common sections in multiqc_config.

*.{yml,yaml}

Optional logo file for MultiQC

*.{png}

Output

Name (Type)
Description
Pattern

report (file)

MultiQC report file

multiqc_report.html

data (directory)

MultiQC data dir

multiqc_data

plots (file)

Plots created by MultiQC

*_data

versions (file)

File containing software versions

versions.yml
included in
airrflowampliseqbacassbamtofastqcallingcardscircdnacircrnacreatepanelrefscrisprseqdemultiplexepitopepredictionfastquorumfuncscangenomeannotatorgenomeassemblergenomeskimgwashgtseqhicarhlatypingisoseqliverctanalysismagmarsseqmcmicrometapepmetatdenovomethylseqmhcquantmolkartmultiplesequencealignnanoseqnanostringnascentpangenomepathogensurveillancephageannotatorphyloplaceproteinfoldquantmsradseqrarediseasernadnavarrnafusionrnasplicernavarsarekscrnaseqsmrnaseqspatialtranscriptomicsspinningjennyssdstaxprofilervariantcatalogueviralintegration
authors
Github user abhi18av Github user bunop Github user drpatelh Github user jfy133
get in touch
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Tools

multiqc
GPL-3.0-or-later

MultiQC searches a given directory for analysis logs and compiles a HTML report. It's a general use tool, perfect for summarising the output from numerous bioinformatics tools.

multiqc.info multiqc.info/docs