Description

Aggregate results from bioinformatics analyses across many samples into a single report

Input

name:type
description
pattern

multiqc_files:file

List of reports / files recognised by MultiQC, for example the html and zip output of FastQC

multiqc_config:file

Optional config yml for MultiQC

*.{yml,yaml}

extra_multiqc_config:file

Second optional config yml for MultiQC. Will override common sections in multiqc_config.

*.{yml,yaml}

multiqc_logo:file

Optional logo file for MultiQC

*.{png}

replace_names:file

Optional two-column sample renaming file. First column a set of patterns, second column a set of corresponding replacements. Passed via MultiQC’s --replace-names option.

*.{tsv}

sample_names:file

Optional TSV file with headers, passed to the MultiQC —sample_names argument.

*.{tsv}

Output

name:type
description
pattern

report

*multiqc_report.html:file

MultiQC report file

multiqc_report.html

data

*_data:directory

MultiQC data dir

multiqc_data

plots

*_plots:file

Plots created by MultiQC

*_data

versions

versions.yml:file

File containing software versions

versions.yml

Tools

multiqc
GPL-3.0-or-later

MultiQC searches a given directory for analysis logs and compiles a HTML report. It's a general use tool, perfect for summarising the output from numerous bioinformatics tools.