modules/multiqc
Aggregate results from bioinformatics analyses across many samples into a single report
QCbioinformatics toolsBeautiful stand-alone HTML report
Input
Name (Type)
Description
Pattern
List of reports / files recognised by MultiQC, for example the html and zip output of FastQC
Second optional config yml for MultiQC. Will override common sections in multiqc_config.
*.{yml,yaml} Optional two-column sample renaming file. First column a set of
patterns, second column a set of corresponding replacements. Passed via
MultiQC’s --replace-names option.
*.{tsv} included in
airrflow ampliseq bamtofastq callingcards circrna createpanelrefs createtaxdb crisprseq datasync demo demultiplex denovotranscript detaxizer epitopeprediction fastquorum funcscan genomeannotator genomeassembler genomeskim gwas hgtseq hicar hlatyping isoseq liverctanalysis mag magmap marsseq mcmicro metaboigniter metapep metatdenovo methylseq mhcquant molkart nanoseq nanostring nascent omicsgenetraitassociation pairgenomealign pangenome pathogensurveillance phageannotator phaseimpute phyloplace proteinfold quantms radseq rangeland raredisease readsimulator reportho riboseq rnadnavar rnafusion rnasplice rnavar sammyseq sarek scdownstream scnanoseq scrnaseq seqinspector smrnaseq spatialvi ssds taxprofiler tbanalyzer variantbenchmarking variantcatalogue viralintegration
maintainers
