Description

Generate statistics from a bam file

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

bam (file)

the bam file to calculate statistics of

*.{bam}

Output

Name (Type)
Description
Pattern

txt (file)

bam statistics report

*.bam_stat.txt

versions (file)

File containing software versions

versions.yml

Tools

rseqc
GPL-3.0-or-later

RSeQC package provides a number of useful modules that can comprehensively evaluate high throughput sequence data especially RNA-seq data.