Calculate read duplication rate
meta
Groovy Map containing sample information e.g. [ id:‘test’, single_end
bam
the alignment in bam format
*.{bam}
bed
a bed file for the reference gene model
*.{bed}
seq_xls
Read duplication rate determined from mapping position of read
*seq.DupRate.xls
pos_xls
Read duplication rate determined from sequence of read
*pos.DupRate.xls
pdf
plot of duplication rate
*.pdf
rscript
script to reproduce the plot
*.R
versions
File containing software versions
versions.yml
RSeQC package provides a number of useful modules that can comprehensively evaluate high throughput sequence data especially RNA-seq data.
