8 pipeline releases, 6 upcoming events.

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1st November 2022

New pipeline first releases! 🎉

These pipelines just had their very first release.

nf-core/demultiplexv1.0.0
Demultiplexing pipeline for sequencing data
nf-core/hgtseqv1.0.0
A pipeline to investigate horizontal gene transfer from NGS data

Pipeline releases

nf-core/chipseq
v2.0.03 Oct 2022
nf-core/cutandrun
v3.027 Oct 2022
nf-core/hlatyping
v2.0.018 Oct 2022
nf-core/nascent
v2.0.024 Oct 2022
nf-core/scrnaseq
v2.1.06 Oct 2022
nf-core/smrnaseq
v2.1.024 Oct 2022

Upcoming events

BytesizeBytesize: nf-core/nascent1 Nov 2022
<p>Edmund Miller - University of Texas at Dallas, USA</p>
BytesizeBytesize: Configuring lint tests8 Nov 2022
<p>Phil Ewels, Seqera labs</p>
BytesizeBytesize: using custom scripts in Nextflow pipelines15 Nov 2022
<p>Chris Hakkaart, Seqera labs</p>
BytesizeBytesize: Subworkflows22 Nov 2022
<p>Maxime Garcia, Seqera labs</p>
BytesizeBytesize: Working with GitHub using VSCode and Github CLI29 Nov 2022
<p>Phil Ewels, Seqera labs</p>
BytesizeBytesize: nf-test6 Dec 2022
<p>Edmund Miller, University of Texas at Dallas</p>

In case you missed it

nf-core Training - October 2022
3 Oct 2022 – 5 Oct 2022Training
Hackathon - October 2022 (Barcelona)
10 Oct 2022 – 12 Oct 2022Hackathon
Bytesize: nf-core/airrflow
25 Oct 2022Bytesize

New pipelines & proposals

nf-core/callingcardsNew repo
A pipeline for processing calling cards data
nf-core/differentialabundanceNew repo
Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
nf-core/sammyseqNew repo
Pipeline for Sequential Analysis of MacroMolecules accessibilitY sequencing (SAMMY-seq) data, to analyze chromatin state.

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