• Home
  • Pipelines
  • Resources
    • Components
    • Modules
    • Subworkflows

    • Configs
    • Shared configs

    • Plugins & Actions
    • nft-utils
    • setup-nextflow
    • setup-nf-test
  • Docs
  • Community
    • What's happening
    • Advisories
    • Blog
    • Newsletter

    • Events
    • Bytesize Talks
    • Hackathons
    • Training
    • Talks
    • Weekly Helpdesks

    • Programs and groups
    • Special interest groups
    • In-progress RFCs
    • Mentorships
    • Contributors
    • Shopnew
    • Connect game 👾
  • About
    • About nf-core
    • nf-core Lore
    • Stickers
    • Governance
    • Marketing
    • Code of conduct

    • Publications
    • Statistics

    • Join nf-core
    • Select theme
    • Light
    • Dark
    • System
    • Select theme
    • Light
    • Dark
    • System
    Join nf-coreJoin nf-core

nf-core/pangenome

Renders a collection of sequences into a pangenome graph. https://doi.org/10.1093/bioinformatics/btae609.

pangenome
Launch version 1.1.3https://github.com/nf-core/pangenome
  • Introduction
  • Usage
  • Parameters
  • Output
  • Results
  • Releases
    • 1.1.3
    • 1.1.2
    • 1.1.1
    • 1.1.0
    • 1.0.0
    • dev
Introduction Usage Parameters Output Results Releases
  • 1.1.3
  • 1.1.2
  • 1.1.1
  • 1.1.0
  • 1.0.0
  • dev
  1. nf-core-awsmegatests
  2. pangenome
  3. results-3d02bd1df79f48b4bfdb4ad95d4ca0d7f6aeb337/
  • NameLast ModifiedSize
  • FINAL_GFA/FINAL_ODGI/extract_communities/gfaffix/multiqc_data/multiqc_plots/net2communities/odgi_build/odgi_draw/odgi_layout/odgi_stats/odgi_unchop/odgi_viz/paf2net/pipeline_info/samtools_faidx/scerevisiae8.fasta.gz.community.0_multiqc/scerevisiae8.fasta.gz.community.10_multiqc/scerevisiae8.fasta.gz.community.11_multiqc/scerevisiae8.fasta.gz.community.12_multiqc/scerevisiae8.fasta.gz.community.13_multiqc/scerevisiae8.fasta.gz.community.14_multiqc/scerevisiae8.fasta.gz.community.1_multiqc/scerevisiae8.fasta.gz.community.2_multiqc/scerevisiae8.fasta.gz.community.3_multiqc/scerevisiae8.fasta.gz.community.4_multiqc/scerevisiae8.fasta.gz.community.5_multiqc/scerevisiae8.fasta.gz.community.6_multiqc/scerevisiae8.fasta.gz.community.7_multiqc/scerevisiae8.fasta.gz.community.8_multiqc/scerevisiae8.fasta.gz.community.9_multiqc/seqwish/smoothxg/tabix_bgzip/wfmash/wfmash_map_community/
    multiqc_report.html
    4 months5.53 MB
    Download fileCopy file URLCopy S3 URL
    Making awesome workflows since 2018.

    Supported by:

    +++
    See the source code for this website on GitHub:
    https://github.com/nf-core/website