Version history

Initial release of nf-core/pgdb, created with the nf-core template.


The initial version of the pipeline features the following steps:

  • (optional) ENSEMBL Reference proteomes included in final proteome
  • Convert a Variant genome database like COSMIC or CBioPortal to proteomes
  • Convert provided VCF to proteome database
  • (optional) Generate the decoy database and attach it to the final proteome

Known issues

If you experience nextflow running forever after a failed step, try setting errorStrategy = terminate. See the corresponding nextflow issue.