Initial release of nf-core/pgdb, created with the nf-core template.

Added

The initial version of the pipeline features the following steps:

• (optional) ENSEMBL Reference proteomes included in final proteome

• Convert a Variant genome database like COSMIC or CBioPortal to proteomes

• Convert provided VCF to proteome database

• (optional) Generate the decoy database and attach it to the final proteome

Known issues

If you experience nextflow running forever after a failed step, try setting errorStrategy = terminate. See the corresponding nextflow issue.