Pipeline for the analysis of ribosome profiling, or Ribo-Seq (also named ribosome footprinting) data.
Define where the pipeline should find input data and save output data.
Reference genome related files and options required for the workflow.
Building indexes for alignement.
adapter sequence trimming required in the workflow.
Options for processing reads with unique molecular identifiers
Aligning the fastq files to transcriptome and rRNA.
Parameters used to describe centralised config profiles. These should not be edited.
Set the top limit for requested resources for any single job.
Less common options for the pipeline, typically set in a config file.