RNA-seq analysis pipeline for detection gene-fusions
Skip analysis steps
Define where the pipeline should find input data and save output data.
Options to adjust read trimming criteria.
Option to compress BAM files to CRAM.
Reference genome related files and options required for the workflow.
Parameters used to describe centralised config profiles. These should not be edited.
Set the top limit for requested resources for any single job.
Less common options for the pipeline, typically set in a config file.