nf-core/sarek
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
annotationcancergatk4genomicsgermlinepre-processingsomatictarget-panelsvariant-callingwhole-exome-sequencingwhole-genome-sequencing
These pages are for an old version of the pipeline (
Launch version 2.6 https://github.com/nf-core/sarek 2.6). The latest
stable release is
3.5.0
.