Version history

1.0.0 “Cobra Tin Beetle” - 2020-05-14

Initial release of nf-core/slamseq featuring:

  • FastQC read quality control
  • (Optional) Adapter trimming
  • Alignment filtering and multimapper recovery
  • SNP calling to filter T>C SNPs
  • Total and converted read quantification
  • Collapsing quantifications on gene level
  • Calculating QC stats
  • Summarising Slamdunk results
  • Determine direct transcriptional targets
  • Present QC for raw read, trimming, alignment, filtering and quantification