bam_methyldackel

Performs methylation quantification based on negative readout of C to T conversion of 3-letter genome alignments using Methyldackel.

3-letter genomemethylation5mCmethylseqbisulphitebisulfitebam

Description

Performs methylation quantification based on negative readout of C to T conversion of 3-letter genome alignments using Methyldackel.

name

description

pattern

BAM alignment files with index
Structure: [ val(meta), path(bam), path(bai) ]

*.bam

Reference genome fasta and index
Structure: [ val(meta), path(fasta), path(fai) ]

*.{fa,fa.gz}

name

description

pattern

bedGraph file, containing per-base methylation metrics
Structure: [ val(meta), path(bedgraph) ]

*.bedGraph

methylKit file, containing per-base methylation metrics
Structure: [ val(meta), path(methylKit) ]

*.methylKit

Text file containing methylation bias
Structure: [ val(meta), path(mbias) ]

*.{txt}

Collected MethylDackel files for use as MultiQC input

Structure: [ path(files) ]

*.{html,txt}