Output
Name (Type)
Description
Pattern
bamstat_txt (file)
*.bam_stat.txt
innerdistance_all (file)
All the output files from RSEQC_INNERDISTANCE
*.{txt,pdf,R}
innerdistance_distance (file)
*.inner_distance.txt
innerdistance_freq (file)
frequencies of different insert sizes
*.inner_distance_freq.txt
innerdistance_mean (file)
mean/median values of inner distances
*.inner_distance_mean.txt
innerdistance_pdf (file)
distribution plot of inner distances
*.inner_distance_plot.pdf
innerdistance_rscript (file)
script to reproduce the plot
*.inner_distance_plot.R
inferexperiment_txt (file)
infer_experiment results report
*.infer_experiment.txt
junctionannotation_all (file)
All the output files from RSEQC_JUNCTIONANNOTATION
*.{bed,xls,pdf,R,log}
junctionannotation_bed (file)
bed file of annotated junctions
*.junction.bed
junctionannotation_interact_bed (file)
*.Interact.bed
junctionannotation_xls (file)
xls file with junction information
*.xls
junctionannotation_pdf (file)
*.junction.pdf
junctionannotation_events_pdf (file)
*.events.pdf
junctionannotation_rscript (file)
Rscript to reproduce the plots
*.r
junctionannotation_log (file)
Log file generated by tool
*.log
junctionsaturation_all (file)
All the output files from RSEQC_JUNCTIONSATURATION
*.{pdf,R}
junctionsaturation_pdf (file)
Junction saturation report
*.pdf
junctionsaturation_rscript (file)
Junction saturation R-script
*.r
readdistribution_txt (file)
the read distribution report
*.read_distribution.txt
readduplication_all (file)
All the output files from RSEQC_READDUPLICATION
*.{xls,pdf,R}
readduplication_seq_xls (file)
Read duplication rate determined from mapping position of read
*seq.DupRate.xls
readduplication_pos_xls (file)
Read duplication rate determined from sequence of read
*pos.DupRate.xls
readduplication_pdf (file)
*.pdf
readduplication_rscript (file)
script to reproduce the plot
*.R
tin_txt (file)
TXT file containing tin.py results summary
*.txt
versions (file)
File containing software versions
versions.yml
