subworkflows/fastq_align_bowtie2

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

List of input FastQ files of size 1 and 2 for single-end and paired-end data,
respectively.

Bowtie2 genome index files

Save reads that do not map to the reference (true) or discard them (false)
(default: false)

Save reads that do not map to the reference (true) or discard them (false)

Reference fasta file