Description

Subworkflow with functionality that may be useful for any Nextflow pipeline

Input

name:type
description
pattern

Print the version of the pipeline and exit

dump_parameters :boolean

Dump the parameters of the pipeline to a JSON file

output_directory :directory

Path to output dir to write JSON file to.

results/

check_conda_channel :boolean

Check if the conda channel priority is correct.

Output

name:type
description
pattern

dummy_emit :boolean

Dummy emit to make nf-core subworkflows lint happy

included in
airrflow ampliseq bacass bamtofastq chipseq circrna createpanelrefs createtaxdb crisprseq datasync deepmodeloptim demo demultiplex denovotranscript detaxizer differentialabundance drugresponseeval epitopeprediction fastqrepair fastquorum fetchngs funcscan genomeqc isoseq mag magmap mcmicro meerpipe metaboigniter metapep methylarray methylseq mhcquant multiplesequencealign nanostring oncoanalyser pacvar pairgenomealign pangenome pathogensurveillance phaseimpute pixelator proteinfold rangeland raredisease readsimulator reportho riboseq rnadnavar rnafusion rnaseq sammyseq sarek scdownstream scnanoseq scrnaseq seqinspector smrnaseq spatialvi taxprofiler tbanalyzer tfactivity troughgraph variantbenchmarking
included modules and subworkflows
maintainers
Github user adamrtalbot
Github user drpatelh
Github user maxulysse
get in touch
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