Description

Subworkflow with functionality that may be useful for any Nextflow pipeline

Input

Name (Type)
Description
Pattern

Print the version of the pipeline and exit

dump_parameters (boolean)

Dump the parameters of the pipeline to a JSON file

output_directory (directory)

Path to output dir to write JSON file to.

results/

check_conda_channel (boolean)

Check if the conda channel priority is correct.

Output

Name (Type)
Description
Pattern

dummy_emit (boolean)

Dummy emit to make nf-core subworkflows lint happy

included in
airrflow ampliseq bacass bamtofastq circrna createpanelrefs createtaxdb datasync demo denovotranscript detaxizer differentialabundance epitopeprediction fastquorum fetchngs mag magmap mcmicro meerpipe metaboigniter metapep mhcquant multiplesequencealign oncoanalyser pairgenomealign pangenome phaseimpute pixelator proteinfold rangeland raredisease readsimulator reportho riboseq rnadnavar rnafusion sarek scdownstream scnanoseq scrnaseq seqinspector smrnaseq spatialvi taxprofiler tbanalyzer tfactivity variantbenchmarking
included modules and subworkflows
maintainers
Github user adamrtalbot
Github user drpatelh
Github user maxulysse
get in touch
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