Description

Subworkflow with utility functions specific to the nf-core pipeline template

Input

name
description
pattern

nextflow_cli_args

Nextflow CLI positional arguments

Output

name
description
pattern

success

Dummy output to indicate success

abotyper airrflow ampliseq bacass bamtofastq cellpainting chipseq circrna createpanelrefs createtaxdb crisprseq datasync deepmodeloptim demo demultiplex denovotranscript detaxizer differentialabundance drop drugresponseeval epitopeprediction evexplorer fastqrepair fastquorum fetchngs funcscan genomeassembler genomeqc hlatyping isoseq lncpipe lsmquant mag magmap mcmicro meerpipe metaboigniter metapep metatdenovo methylarray methylong methylseq mhcquant mitodetect molkart multiplesequencealign nanostring nascent oncoanalyser pacvar pairgenomealign pangenome pathogensurveillance phaseimpute phyloplace pixelator proteinannotator proteinfamilies proteinfold rangeland raredisease readsimulator references reportho riboseq rnadnavar rnafusion rnaseq rnavar sammyseq sarek scdownstream scnanoseq scrnaseq seqinspector smrnaseq spatialvi spatialxe taxprofiler tbanalyzer tfactivity troughgraph variantbenchmarking
Github user adamrtalbot
Github user maxulysse
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