Common utility functions for the nf-core python package.

nf_core.utils.fetch_wf_config(wf_path, wf=None)

Uses Nextflow to retrieve the the configuration variables from a Nextflow workflow.

  • Parameters: wf_path (str) – Nextflow workflow file system path.
  • Returns: Workflow configuration settings.
  • Return type: dict


Sets up local caching for faster remote HTTP requests.

Caching directory will be generated by tempfile.gettempdir() under a nfcore_cache subdir.