nf-core/tumourevo
Analysis pipleine to model tumour clonal evolution from WGS data (driver annotation, quality control of copy number calls, subclonal and mutational signature deconvolution)
cancer-evolutioncancer-genomicscopy-number-variationmutational-signaturespopulation-geneticsquality-controlsubclonal-deconvolutionvariant-annotation
This is the development version of the pipeline.
This pipeline uses DSL1. It will not work with Nextflow versions after
Launch development version https://github.com/nf-core/tumourevo 22.10.6.
Learn more.
Define where the pipeline should find input data and save output data.
Path to comma-separated file containing information about the samples in the experiment.
required
type:
stringpattern:
^\S+\.csv$You will need to create a design file with information about the samples in your experiment before running the pipeline. Use this parameter to specify its location. It has to be a comma-separated file with 3 columns, and a header row.
The output directory where the results will be saved. You have to use absolute paths to storage on Cloud infrastructure.
required
type:
string