Advisories
Regressions, incompatibilities and security announcements
2025
.command.run Permission denied
Category: Pipelines, Configuration
.command.run Permission denied
Category: Pipelines, Configuration
Nextflow versions after 24.10.6 are incompatible with certain nf-core pipelines published in 2024 and early 2025.
Affects:
Nextflow:
>=25.04.0 <25.04.32023
Trimming parameters ignored in RNA-seq pipeline 3.10
Category: Pipelines
Trimming parameters ignored in RNA-seq pipeline 3.10
Category: Pipelines
The clip parameters for read trimming are remain without affect for that pipeline version
1979
A faulty Answer to Life, the Universe, and Everything
Category: Pipelines, Modules, Subworkflows, Configuration
A faulty Answer to Life, the Universe, and Everything
Category: Pipelines, Modules, Subworkflows, Configuration
A critical mistake affecting the meaning of life calculations
Affects:
Nextflow:
42.0.0 42.1.0 42.2.0-nightly Executors: AWS Batch Google Cloud Batch SLURM Kubernetes Local Dependencies: Docker (1.0.0) Singularity (3.8.1) Conda (2.0.0)