nf-core/demultiplex
Demultiplexing pipeline for sequencing data
bases2fastqbcl2fastqdemultiplexingelementbiosciencesillumina
Version history
Neodymium Newt
This minor release is focused on updating container image locations to host as much as possible on quay.io.
What’s Changed
- Move containers for pipeline to quay.io by @drpatelh in #125
- Dev -> Master for 1.3.2 release by @drpatelh in #126
Full Changelog: 1.3.1…1.3.2
What’s Changed
- Use Nextflow.error instead of ‘exit 1’ by @adamrtalbot in #122
- Move test data from pipeline to testdatasets by @drpatelh in #123
- Dev -> Master for 1.3.1 patch release by @drpatelh in #124
Full Changelog: 1.3.0…1.3.1
[1.3.0] - 2023-05-31
Credits
Special thanks to the following for their contributions to the release:
- Matthias De Smet
- Maxime Garcia
- Adam Talbot, and doubly-so given that it’s the first contribution to nf-core/demultiplex!
Thank you to everyone else that has contributed by reporting bugs, enhancements or in any other way, shape or form.
What’s Changed
- CHORES: Back to business as usual by @maxulysse in #113
- Important! Template update for nf-core/tools v2.8 by @nf-core-bot in #114
- Update all modules and specify container registry using docker.registry default by @adamrtalbot in #115
- Bump fastp by @matthdsm in #117
- Re-add aws_tower config for running on Tower by @adamrtalbot in #119
- Release candidate 1.3.0 by @adamrtalbot in #118
Full Changelog: 1.2.0…1.3.0
What’s Changed
- Sgdemux dev by @sam-white04 in #91
- Update supported sequencing platforms by @nh13 in #94
- Codeowners by @Emiller88 in #95
- Fix dark image by @Emiller88 in #96
- Add fqtk as a demultiplexer by @sam-white04 in #99
- Bump bcl2fastq by @Emiller88 in #101
- FIX: update test_full with new test data for megatests by @maxulysse in #107
- FIX: Move untar to bclconvert and bcl2fastq processes by @maxulysse in #108
- prepare release: 1.2.0 by @maxulysse in #111
- Release 1.2.0 by @maxulysse in #112
New Contributors
- @sam-white04 made their first contribution in #91
- @nh13 made their first contribution in #94
- @maxulysse made their first contribution in #107
Full Changelog: 1.1.0…1.2.0
Added
- #63 Replace local bcl_demultiplex subworkflow with nf-core version (@matthdsm)
- #63 Add bases_demultiplex local subworkflow (@matthdsm)
- #63 Replace fastqc with falco for speedier QC, fixes Replace fastqc with falco #62 (@matthdsm)
- #64 Add subway map by @nvnieuwk
- #70 Make tools and trimming optional (@matthdsm)
- #71 Add nf-test (@emiller88)
Changed
- #78 Nextflow minimal version is now
22.10.1
Fixed
- #63 Fix MultiQC report inputs, fixes MultiQC report is empty (@matthdsm)
- #67 Enable institutional configs (@emiller88)
- #83 Fix skip_tools (@glichtenstein)
- #80 When NoLaneSplitting is true the process fails because of a glob. See nf-core/modules #2745. (@matthdsm)
- #79 Update link in docs to samplesheet (@glichtenstein & @emiller88)
Initial release of nf-core/demultiplex, created with the nf-core template.