Description

Subworkflow with utility functions specific to the nf-core pipeline template

Input

name
description
pattern

nextflow_cli_args

Nextflow CLI positional arguments

Output

name
description
pattern

valid_config

Whether a custom configuration or profile was provided to the pipeline

included in
abotyperairrflowampliseqbacassbacmodelbamtofastqcellpaintingchipseqcircrnacoproidcreatetaxdbcrisprseqdaamicrobiomedartseqdatasyncdeepmodeloptimdeepmutscandemodemultiplexdenovotranscriptdetaxizerdifferentialabundancediseasemodulediscoverydropdrugresponseevalepitopepredictionevexplorerfastqrepairfastquorumfetchngsfuncprofilerfuncscangenephylomodelergenomeassemblergenomeqcgenomicrelatednessgwashlatypingisoseqlncpipelongrarediseaselsmquantmagmagmapmcmicromeerpipemetaboignitermetapepmetatdenovomethylarraymethylongmethylseqmhcquantmitodetectmolkartmspepidmultiplesequencealignnanostringnascentncrnannotatoroncoanalyserpacsomaticpacvarpairgenomealignpangenomepanoramaseqpathogenepidemiologypathogensurveillancephaseimputephyloplacepixelatorplasmodiumdrugresproteinannotatorproteinfamiliesproteinfoldprovenancereportrangelandrarediseaserarevariantburdenreadsimulatorreferencesreporthoribomsqcriboseqrnadnavarrnafusionrnaseqrnastructuromesammyseqsarekscdownstreamscnanoseqscrnaseqseqinspectorseqsubmitsmrnaseqsopaspatialaxespatialvistableexpressiontaxprofilertbanalyzertfactivitytroughgraphtumourevovariantbenchmarkingvariantprioritizationviralmetagenomeviralrecon
included modules and subworkflows
maintainers
Github user adamrtalbot
Github user maxulysse
get in touch
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