A bioinformatics best-practice analysis pipeline for epitope prediction and annotation
Define where the pipeline should find input data and save output data.
Options for the genome and proteome reference.
Reference genome related files and options required for the workflow.
Options for the peptide prediction step.
Options for optimising the pipeline run execution.
External MHC binding prediction software that is not shipped with the pipeline.
Parameters used to describe centralised config profiles. These should not be edited.
Set the top limit for requested resources for any single job.
Less common options for the pipeline, typically set in a config file.