What’s Changed

• Fix saving of samtools output by @erikrikarddaniel in https://github.com/nf-core/magmap/pull/178
• Fix/bakta gff compatibility by @Laurenz0908 in https://github.com/nf-core/magmap/pull/181
• Template 3.5.2, Nextflow lint and version topic channels by @erikrikarddaniel in https://github.com/nf-core/magmap/pull/186
• Per sample genome sets by @erikrikarddaniel in https://github.com/nf-core/magmap/pull/188
• Add genome accno to counts tables by @erikrikarddaniel in https://github.com/nf-core/magmap/pull/189
• Pipeline lint release v1.1.0 by @danilodileo in https://github.com/nf-core/magmap/pull/190
• Review release 1.1.0 by @danilodileo in https://github.com/nf-core/magmap/pull/192
• fix github actions by @danilodileo in https://github.com/nf-core/magmap/pull/193
• Fix sample mode by @erikrikarddaniel in https://github.com/nf-core/magmap/pull/197
• Fix –indexes so it actually takes a list of indexes by @erikrikarddaniel in https://github.com/nf-core/magmap/pull/198
• Template update 4.0.2 by @danilodileo in https://github.com/nf-core/magmap/pull/199
• issue-200 by @danilodileo in https://github.com/nf-core/magmap/pull/201
• change NFT_WORKDIR to fix bug in nf-tests when conda is running by @danilodileo in https://github.com/nf-core/magmap/pull/202
• change NFT_WORKDIR by @danilodileo in https://github.com/nf-core/magmap/pull/203
• Fix pre-commit by @danilodileo in https://github.com/nf-core/magmap/pull/206
• updated prokka module by @danilodileo in https://github.com/nf-core/magmap/pull/207
• bypass prokka in nf-tests w conda by @danilodileo in https://github.com/nf-core/magmap/pull/208
• Magmap release v1.1.0 by @danilodileo in https://github.com/nf-core/magmap/pull/191

New Contributors

• @Laurenz0908 made their first contribution in https://github.com/nf-core/magmap/pull/181

Full Changelog: https://github.com/nf-core/magmap/compare/1.0.0...1.1.0