MARS-seq v2 pre-processing pipeline with velocity
Define where the pipeline should find input data and save output data.
Reference genome related files and options required for the workflow.
Options to adjust parameters and filtering criteria for read alignments.
Convert original reads to 10X format in order to execute RNA velocity
Parameters used to describe centralised config profiles. These should not be edited.
Set the top limit for requested resources for any single job.
Less common options for the pipeline, typically set in a config file.