Version history

First release of nf-core/metapep

Main functionality:

  • Download proteins for input type taxa from Entrez.
  • Predict proteins for input type assembly or bins using Prodigal.
  • Generate peptides from proteins.
  • Split peptide files into chunks for parallel prediction and report stats.
  • Predict epitopes for given alleles and peptides using SYFPEITHI, MHCflurry or MHCnuggets.
  • Downstream visualizations between conditions (different microbiomes assemblies, bins, taxids or same input class with different weights) given within samplesheet
  • Summarize workflow using MultiQC
  • Relational datamodel to handle large amounts of data Tables defined within model
  • Additional subworkflow to fetch possible model and peptide lengths for the prediction tools