hmmalign from the HMMER suite aligns a number of sequences to an HMM profile
meta
Groovy Map containing sample information e.g. [ id:‘test’ ]
fasta
Amino acid or nucleotide gzipped compressed fasta file
*.{fna.gz,faa.gz,fasta.gz,fa.gz}
hmm
A gzipped HMM file
*.hmm.gz
Groovy Map containing sample information e.g. [ id:‘test’, single_end
versions
File containing software versions
versions.yml
sthlm
Multiple alignment in gzipped Stockholm format
*.sthlm.gz
Biosequence analysis using profile hidden Markov models
