A pipeline for processing Molecular Cartography data from Resolve Bioscience (combinatorial FISH)
Define which segmentation methods should be used and how.
Defines gridsize for Mindagap and should contrast adjustment be applied and how.
Define whether a cropped training set for segmentation methods should be created.
Define where the pipeline should find input data and save output data.
Parameters used to describe centralised config profiles. These should not be edited.
Set the top limit for requested resources for any single job.
Less common options for the pipeline, typically set in a config file.