2 blog posts, 1 advisory, 9 pipeline releases, 4 upcoming events.
 1st August 2026 |
Blog posts
Maintainers Minutes: May - June 2026
Keeping you informed of the latest maintainers discussions
1 Jul 2026 · by maxulysse
Keeping you informed of the latest maintainers discussions
1 Jul 2026 · by maxulysse
Advisories
| criticalSecurity Remote code execution and bot token theft via the pipeline template's PR-comment workflow A workflow in the pipeline template ran a value taken from a contributor's pull request as a command, letting an outside attacker run code on nf-core's CI and steal a shared bot token |
New pipeline first releases! 🎉
These pipelines just had their very first release.
| nf-core/mcmicrov2.0.0 An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data. |
| nf-core/sopav1.0.0 Nextflow version of Sopa - spatial omics pipeline and analysis |
Pipeline releases
Upcoming events
| TalkBytesize: nf-meta | 11 Aug 2026 |
| Julian Flesch, QBiC | |
| HackathonHackathon - Agosto 2026 | 15 Aug 2026 – 16 Aug 2026 |
| Um hackathon presencial para contribuir com tarefas do nf-core e de seus projetos Nextflow | |
| TalkBytesize: nf-core/longraredisease | 18 Aug 2026 |
| Nour Mahfel, University of Birmingham | |
| TalkBytesize: nf-core/drop | 25 Aug 2026 |
| Ata Jadid Ahari, Nicolas Vannieuwkerke | |
In case you missed it
| Introducing the nf-core newsletter 23 Jun 2026 |  |
| Why parameters are strings all of a sudden 26 May 2026 |  |
New pipelines & proposals
Proposals from nf-core/proposals.
nf-core/pathogenepidemiologyNew repo
[UNDER DEVELOPMENT] A profile-based pipeline for genomic epidemiological analysis of predefined pathogens.
[UNDER DEVELOPMENT] A profile-based pipeline for genomic epidemiological analysis of predefined pathogens.
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