nf-core/pacvar
Longread PacBio sequencing processing for WGS and PureTarget
alignmentlong-readpacbiopuretargetvariant-callingwgs
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nf-core/pacvar is a bioinformatics pipeline that processes long-read PacBio data. Specifically, the pipeline provides two workflows: one for processing whole-genome sequencing data, and another for processing reads from the PureTarget expansion panel offered by PacBio.
- Aligns raw BAM files, sorts and Indexes
- Variant calls (with GATK or Deepvariant)
- For repeat Regions - characterizes number of motifs and produces waterfall plots
nf-core/pacvar is a bioinformatics pipeline that processes long-read PacBio data. Specifically, the pipeline provides two workflows: one for processing whole-genome sequencing data, and another for processing reads from the PureTarget expansion panel offered by PacBio.
- Aligns raw BAM files, sorts and Indexes
- Variant calls (with GATK or Deepvariant)
- For repeat Regions - characterizes number of motifs and produces waterfall plots
Full Changelog: v1.0.0…1.0.0
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