nf-core/pixelator
Pipeline to generate Molecular Pixelation data with Pixelator (Pixelgen Technologies AB)
Version history
What’s Changed
- chore: sync dev after release and bump to 1.3.0dev by @fbdtemme in #95
- Make
task.extassigments closures by @fbdtemme in #96 - Update metromap to include layout step by @fbdtemme in #98
- Update citations by @fbdtemme in #97
- Chore/update readme by @ambarrio in #99
- Use R1/R2 suffixes in amplicon input fastq file renaming by @fbdtemme in #100
- Fix validation issue when using panel_file instead of panel by @fbdtemme in #101
- Restructure output folder by @fbdtemme in #102
- Make rate diff default colocalization transformation by @johandahlberg in #103
- Update pixelator to 0.18.1 by @fbdtemme in #104
- Bump version to 1.3.0 by @fbdtemme in #105
- Release pixelator 1.3.0 by @fbdtemme in #106
New Contributors
Software versions
Software dependencies
| Dependency | Old version | New version |
|---|---|---|
pixelator | 0.17.1 | 0.18.2 |
[!NOTE] Dependency has been updated if both old and new version information is present. Dependency has been added if just the new version information is present. Dependency has been removed if new version information isn’t present.
Full Changelog: 1.2.0…1.3.0
What’s Changed
- Template update for nf-core/tools v2.14.1 by @fbdtemme in #89
- Update pixelator to 0.17.1 by @johandahlberg in #90
- Set
process_highto use 64GB of RAM andprocess_high_memoryto use 128GB of RAM by @johandahlberg in #91 - Minor documentation fixes by @johandahlberg in #92
- Improve read renaming by @fbdtemme in #93
- Release nf-core/pixelator 1.2.0 by @fbdtemme in #94
Full Changelog: 1.1.0…1.2.0
What’s Changed
- Important! Template update for nf-core/tools v2.13.1 by @nf-core-bot in #83
- Update to pixelator 0.16.2 by @johandahlberg in #84
- Remove a workaround for container issues, silence some warnings, update default resources by @fbdtemme in #85
- Release pixelator 1.1.0 by @fbdtemme in [#86, https:](https://github.com/nf-core/pixelator/pull/86, https:)//github.com/nf-core/pixelator/pull/87
Software dependencies
| Dependency | Old version | New version |
|---|---|---|
pixelator | 0.15.2 | 0.16.2 |
NB: Dependency has been updated if both old and new version information is present.
NB: Dependency has been added if just the new version information is present.
NB: Dependency has been removed if new version information isn’t present.
Full Changelog: 1.0.3…1.1.0
What’s Changed
- Important! Template update for nf-core/tools v2.11 by @nf-core-bot in #74
- fix: use adapterqc output as main output of PIXELATOR_QC by @fbdtemme in #76
- fix validation issues with meta-schema by @fbdtemme in #77
- Prepare release 1.0.3 by @fbdtemme in #78
- Release 1.0.3 by @fbdtemme in #79
New Contributors
- @nf-core-bot made their first contribution in #74
Full Changelog: 1.0.2…1.0.3
[1.0.1] - 2023-10-27
Enhancements & fixes
- [PR #66] - Add a warning and workaround for singularity & apptainer
- Cleanup some linting warnings
- Update docker image in RENAME_READS to match the singularity container
Software dependencies
| Dependency | Old version | New version |
|---|---|---|
pixelator | 0.15.0 | 0.15.2 |
NB: Dependency has been updated if both old and new version information is present.
NB: Dependency has been added if just the new version information is present.
NB: Dependency has been removed if new version information isn’t present.
[1.0.0] - 2023-10-17
Initial release of nf-core/pixelator.
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