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nf-core/raredisease
Edit

Call and score variants from WGS/WES of rare disease patients.

diagnosticsrare-diseasesnvstructural-variantsvariant-annotationvariant-callingweswgs
This is the development version of the pipeline.
Launch development version https://github.com/nf-core/raredisease
  • Introduction
  • Usage
  • Parameters
  • Output
  • Releases
    • 2.6.0
    • 2.5.0
    • 2.4.0
    • 2.3.0
    • 2.2.0
    • 2.1.0
    • 2.0.1
    • 2.0.0
    • 1.1.1
    • 1.1.0
    • 1.0.0
    • dev
Introduction Usage Parameters Output Releases
  • 2.6.0
  • 2.5.0
  • 2.4.0
  • 2.3.0
  • 2.2.0
  • 2.1.0
  • 2.0.1
  • 2.0.0
  • 1.1.1
  • 1.1.0
  • 1.0.0
  • dev
run with
See the docs on how to configure the Seqera Platform CLI.
  • nf-core
  • Nextflow
  • Seqera Platform
subscribers
165
stars
112
open issues
53
open PRs
4
last release
7 months ago
last update
7 months ago
included modules
bcftools_annotatebcftools_concatbcftools_filterbcftools_mergebcftools_norm and 105 more modules
included subworkflows
utils_nextflow_pipelineutils_nfcore_pipelineutils_nfschema_pluginvcf_filter_bcftools_ensemblvep
contributors
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get help
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