nf-core/raredisease
Call and score variants from WGS/WES of rare disease patients.
Version history
What's Changed
* Patch release v1.1.1 by @ramprasadn in https://github.com/nf-core/raredisease/pull/388
*Full Changelog*: https://github.com/nf-core/raredisease/compare/1.1.0...1.1.1
What's Changed
* Annotate small indels with CADD scores by @ramprasadn in https://github.com/nf-core/raredisease/pull/325
* convert bam to cram by @ramprasadn in https://github.com/nf-core/raredisease/pull/340
* Add shiftfasta by @ramprasadn in https://github.com/nf-core/raredisease/pull/354
* feat added MT deletion script by @Lucpen in https://github.com/nf-core/raredisease/pull/349
* Adding upd by @hrydbeck in https://github.com/nf-core/raredisease/pull/364
* Add ek by @Lucpen in https://github.com/nf-core/raredisease/pull/365
* add chromograph by @ramprasadn in https://github.com/nf-core/raredisease/pull/366
* Update to template 2.9 by @ramprasadn in https://github.com/nf-core/raredisease/pull/372
* Avoid publishing uncompressed VCF-file from HMTNOTE_ANNOTATE by @asp8200 in https://github.com/nf-core/raredisease/pull/368
* added check for case id by @EmmaCAndersson in https://github.com/nf-core/raredisease/pull/357
* Gatkcnvcaller by @ramprasadn in https://github.com/nf-core/raredisease/pull/362
* Update schema, output.md, and remove unused parameters by @ramprasadn in https://github.com/nf-core/raredisease/pull/373
* update eklipse by @ramprasadn in https://github.com/nf-core/raredisease/pull/374
New Contributors
* @adamrtalbot made their first contribution in https://github.com/nf-core/raredisease/pull/360
* @hrydbeck made their first contribution in https://github.com/nf-core/raredisease/pull/364
* @asp8200 made their first contribution in https://github.com/nf-core/raredisease/pull/368
* @EmmaCAndersson made their first contribution in https://github.com/nf-core/raredisease/pull/357
*Full Changelog*: https://github.com/nf-core/raredisease/compare/1.0.0...1.1.0