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nf-core/sarek

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

annotationcancergatk4genomicsgermlinepre-processingsomatictarget-panelsvariant-callingwhole-exome-sequencingwhole-genome-sequencing
Launch version 3.3.1 https://github.com/nf-core/sarek
  • Introduction
  • Usage
  • Output
  • Results
  • Releases
    • 3.3.1
    • 3.3.0
    • 3.2.3
    • 3.2.2
    • 3.2.1
    • 3.2.0
    • 3.1.2
    • 3.1.1
    • 3.1
    • 3.0.2
    • 3.0.1
    • 3.0
    • 2.7.2
    • 2.7.1
    • 2.7
    • 2.6.1
    • 2.6
    • 2.5.2
    • 2.5.1
    • 2.5
    • dev
Introduction Usage Output Results Releases
  • 3.3.1
  • 3.3.0
  • 3.2.3
  • 3.2.2
  • 3.2.1
  • 3.2.0
  • 3.1.2
  • 3.1.1
  • 3.1
  • 3.0.2
  • 3.0.1
  • 3.0
  • 2.7.2
  • 2.7.1
  • 2.7
  • 2.6.1
  • 2.6
  • 2.5.2
  • 2.5.1
  • 2.5
  • dev

No nextflow_schema.json file found!

It seems like there is no nextflow_schema.json file with parameters defined for this version of the pipeline. Try a newer version.

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See the source code for this website on GitHub:
https://github.com/nf-core/website