nf-core/sopa

Nextflow version of Sopa - spatial omics pipeline and analysis

segmentationspatial-omicsspatial-proteomicsspatial-transcriptomicsspatialdata

Launch version 1.0.1 https://github.com/nf-core/sopa

Version history

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Fixes

Set writable env vars for StarDist and Proseg segmentation (#35)
Ensure the tests can’t silently fail (#29)

Updates

Support the image_scale parameter (#30)
Update the spaceranger module (#28)
Template update for nf-core/tools v4.0.2 (#23)

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Initial release of nf-core/sopa, created with the nf-core template.