fastq_taxonomic_profile_metaphlan

Subworkflow to taxonomically classify metagenomic sequencing data using MetaPhlAn

metaphlanmetagenomicsdatabaseclassificationmergeprofiles

Description

Subworkflow to taxonomically classify metagenomic sequencing data using MetaPhlAn

name

description

pattern

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

The input channel containing the FASTQ files
Structure: [ val(meta), path(fastqs) ]

*.{fastq/fastq.gz}

name

description

pattern

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

File containing software versions
Structure: [ path(versions.yml) ]

versions.yml

Combined MetaPhlAn table
Structure: [ val(meta), path(txt) ]

*.txt