Subworkflow to taxonomically classify metagenomic sequencing data using MetaPhlAn
meta
Groovy Map containing sample information e.g. [ id:‘test’, single_end
ch_fastq
The input channel containing the FASTQ files Structure: [ val(meta), path(fastqs) ]
*.{fastq/fastq.gz}
versions
File containing software versions Structure: [ path(versions.yml) ]
versions.yml
txt
Combined MetaPhlAn table Structure: [ val(meta), path(txt) ]
*.txt
