fastq_taxonomic_profile_metaphlan

Subworkflow to taxonomically classify metagenomic sequencing data using MetaPhlAn

metaphlanmetagenomicsdatabaseclassificationmergeprofiles

Description

Subworkflow to taxonomically classify metagenomic sequencing data using MetaPhlAn

name

description

pattern

The input channel containing the FASTQ files
Structure: [ val(meta), path(fastqs) ]

*.{fastq,fastq.gz}

name

description

pattern

Combined MetaPhlAn table
Structure: [ val(meta), path(txt) ]

*.txt