Description

Subworkflow to taxonomically classify metagenomic sequencing data using MetaPhlAn

Input

name:type
description
pattern

meta :map

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

ch_fastq :file

The input channel containing the FASTQ files
Structure: [ val(meta), path(fastqs) ]

*.{fastq/fastq.gz}

Output

name:type
description
pattern

meta :map

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions :file

File containing software versions
Structure: [ path(versions.yml) ]

versions.yml

txt :file

Combined MetaPhlAn table
Structure: [ val(meta), path(txt) ]

*.txt