API Reference

Tests:

• nf_core.bump_version
  • bump_nextflow_version()
  • bump_pipeline_version()
  • update_file_version()
• nf_core.create
  • PipelineCreate
• nf_core.download
  • ContainerError
  • DownloadError
  • DownloadProgress
  • DownloadWorkflow
  • WorkflowRepo
• nf_core.launch
  • Launch
• nf_core.licences
  • WorkflowLicences
• nf_core.lint
  • run_linting()
  • PipelineLint
• nf_core.list
  • LocalWorkflow
  • RemoteWorkflow
  • Workflows
  • get_local_wf()
  • list_workflows()
  • pretty_date()
• nf_core.modules
• nf_core.params_file
  • ParamsFileBuilder
  • _print_wrapped()
• nf_core.schema
  • PipelineSchema
• nf_core.subworkflows
• nf_core.sync
  • PipelineSync
  • PullRequestException
  • SyncException
• nf_core.utils
  • GitHub_API_Session
  • Pipeline
  • SingularityCacheFilePathValidator
  • anaconda_package()
  • check_if_outdated()
  • custom_yaml_dumper()
  • determine_base_dir()
  • fetch_remote_version()
  • fetch_wf_config()
  • file_md5()
  • get_biocontainer_tag()
  • get_first_available_path()
  • get_repo_releases_branches()
  • is_file_binary()
  • is_pipeline_directory()
  • is_relative_to()
  • load_tools_config()
  • nested_delitem()
  • nested_setitem()
  • parse_anaconda_licence()
  • pip_package()
  • plural_es()
  • plural_s()
  • plural_y()
  • poll_nfcore_web_api()
  • prompt_pipeline_release_branch()
  • prompt_remote_pipeline_name()
  • rich_force_colors()
  • run_cmd()
  • set_wd()
  • setup_nfcore_dir()
  • setup_requests_cachedir()
  • sort_dictionary()
  • strip_ansi_codes()
  • validate_file_md5()
  • wait_cli_function()