nf-core/variantbenchmarking
Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research
benchmarkdraftstructural-variantsvariant-calling
Version history
First release! by @kubranarci
What’s Changed
- pin nf-validation version by @nvnieuwk in #6
- wittyer added by @kubranarci in #24
- sv + small analysis implemented by @kubranarci in #30
- sv benchmark params are exposed by @kubranarci in #34
- Important! Template update for nf-core/tools v2.14.1 by @nf-core-bot in #37
- 35 add a script to merge benchmarking results by @kubranarci in #40
- 41 somatic benchmarking by @kubranarci in #43
- 16 add survivor merge by @kubranarci in #47
- wittyer fixed by @kubranarci in #51
- plot script fixed by @kubranarci in #53
- rtgtools fix by @kubranarci in #56
- 58 test variant extractor for svs by @kubranarci in #60
- svync input channel is fixed by @kubranarci in #61
- 57 fix prepy + rtgtools eval comb by @kubranarci in #63
- 46 add sv benchmarking for somatic by @kubranarci in #70
- Updating the JSON schemas by @nvnieuwk in #73
- 71 add support for multi sample files by @kubranarci in #75
- 44 add aws full test by @kubranarci in #76
- 77 add liftover option for truths by @kubranarci in #78
- metromap file updated updated by @kubranarci in #87
- 52 use datavzrd to create reports that are usable with ncbench by @kubranarci in #99
- 113 enable liftover option for test vcfs by @kubranarci in #115
- Important! Template update for nf-core/tools v3.2.0 by @nf-core-bot in #137
- adding full size aws tests by @kubranarci in #142
- 95 release v100 requirements by @kubranarci in #147
- changes requested by Nicolas by @kubranarci in #151
- Release pipeline v1.0.0 by @kubranarci in #148
New Contributors
- @maxulysse made their first contribution in #2
- @nvnieuwk made their first contribution in #6
- @nf-core-bot made their first contribution in #3
Full Changelog: https://github.com/nf-core/variantbenchmarking/commits/v1.0.0
First release! by @kubranarci
What’s Changed
- pin nf-validation version by @nvnieuwk in #6
- wittyer added by @kubranarci in #24
- sv + small analysis implemented by @kubranarci in #30
- sv benchmark params are exposed by @kubranarci in #34
- Important! Template update for nf-core/tools v2.14.1 by @nf-core-bot in #37
- 35 add a script to merge benchmarking results by @kubranarci in #40
- 41 somatic benchmarking by @kubranarci in #43
- 16 add survivor merge by @kubranarci in #47
- wittyer fixed by @kubranarci in #51
- plot script fixed by @kubranarci in #53
- rtgtools fix by @kubranarci in #56
- 58 test variant extractor for svs by @kubranarci in #60
- svync input channel is fixed by @kubranarci in #61
- 57 fix prepy + rtgtools eval comb by @kubranarci in #63
- 46 add sv benchmarking for somatic by @kubranarci in #70
- Updating the JSON schemas by @nvnieuwk in #73
- 71 add support for multi sample files by @kubranarci in #75
- 44 add aws full test by @kubranarci in #76
- 77 add liftover option for truths by @kubranarci in #78
- metromap file updated updated by @kubranarci in #87
- 52 use datavzrd to create reports that are usable with ncbench by @kubranarci in #99
- 113 enable liftover option for test vcfs by @kubranarci in #115
- Important! Template update for nf-core/tools v3.2.0 by @nf-core-bot in #137
- adding full size aws tests by @kubranarci in #142
- 95 release v100 requirements by @kubranarci in #147
- changes requested by Nicolas by @kubranarci in #151
- Release pipeline v1.0.0 by @kubranarci in #148
New Contributors
- @maxulysse made their first contribution in #2
- @nvnieuwk made their first contribution in #6
- @nf-core-bot made their first contribution in #3
Full Changelog: https://github.com/nf-core/variantbenchmarking/commits/v1.0.0