nf-core/denovotranscript

A pipeline for de novo transcriptome assembly of paired-end short reads from bulk RNA-seq

denovo-assemblyrna-seqtranscriptome

Launch version 1.2.0 https://github.com/nf-core/denovotranscript

Version history

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What’s Changed

bump version to 1.2.0dev by @avani-bhojwani in #25
AWS full test manual dispatch by @avani-bhojwani in #26
Update spades resources and usage instructions by @avani-bhojwani in #27
Important! Template update for nf-core/tools v3.1.0 by @nf-core-bot in #28
Important! Template update for nf-core/tools v3.1.1 by @mirpedrol in #29
Fix ch_transcripts and ch_pubids for AWS by @avani-bhojwani in #30
Fix transrate dependencies issue by @avani-bhojwani in #32
Bump to version 1.2.0 by @avani-bhojwani in #33
Important! Template update for nf-core/tools v3.2.0 by @nf-core-bot in #36
Release version 1.2.0 by @avani-bhojwani in #34

New Contributors

@mirpedrol made their first contribution in #29

Full Changelog: 1.1.0…1.2.0

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What’s Changed

Post-release DOI and changelog update by @avani-bhojwani in #10
Post-release DOI and chagelog update by @avani-bhojwani in #11
Important! Template update for nf-core/tools v3.0.2 by @nf-core-bot in #14
Fix skip_assembly by @avani-bhojwani in #15
Increase trinity resources by @avani-bhojwani in #16
bump pipeline version to 1.1.0 by @avani-bhojwani in #17
Fix Salmon quantification for skip_assembly mode by @avani-bhojwani in #21
Update Trinity module and fix dependency issue by @avani-bhojwani in #24
Release version 1.1.0 by @avani-bhojwani in #18

New Contributors

@nf-core-bot made their first contribution in #14

Full Changelog: 1.0.0…1.1.0

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[1.0.0] - 2024-08-15

Initial release of nf-core/denovotranscript, a pipeline for de novo transcriptome assembly of paired-end short reads from bulk RNA-seq.

Contributors

@avani-bhojwani, @timslittle