nf-core/fastquorum
Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)
consensusumiumisunique-molecular-identifier
Version history
What’s Changed
- chore: bump dev version by @znorgaard in #77
- fix: output bai from ALIGN_CONSENSUS_BAM by @znorgaard in #79
- fix: file glob by @znorgaard in #80
- chore: template update for nf-core/tools version 3.0.2 by @znorgaard in #84
- chore: raise minimum version by @znorgaard in #85
- fix: lower config min version by @znorgaard in #86
- fix: align versioning across tests and config by @znorgaard in #87
- chore: prepare for release by @znorgaard in #88
- fix: allow non-gzipped fastq input by @znorgaard in #93
- fix: conda environments by @znorgaard in #90
- fix: limit downloads by @znorgaard in #95
- chore: set release date by @znorgaard in #96
- chore: version bump by @znorgaard in #99
- Update nf-core components to latest versions by @SPPearce in #98
- chore: release 1.1.0 by @znorgaard in #89
Full Changelog: 1.0.1…1.1.0
What’s Changed
- docs: update subway diagrams by @nh13 in #51
- updates post 1.0.0 release by @nh13 in #50
- Add when conditions to prepare by @SPPearce in #58
- Allow escalation of memory for FilterConsensusReads by @SPPearce in #60
- fix: support when multiple value args can be a number or a comma-delimited string by @nh13 in #66
- bugfix: merging lanes would result in an error by @nh13 in #68
- Allow igenomes to work by @SPPearce in #67
- chore: prepare for 1.0.1 release by @znorgaard in #69
- Add stubs to all local modules by @SPPearce in #71
- chore: correct date by @znorgaard in #75
- chore: release 1.0.1 by @znorgaard in #70
New Contributors
- @znorgaard made their first contribution in #69
Full Changelog: 1.0.0…1.0.1
What’s Changed
- Fix missing code backtick in README by @nh13 in #5
- rename fgcons to fastquorum by @nh13 in #6
- [bugfix] fix missing samtools conda requirement by @nh13 in #7
- Bugfix/make it work local by @nh13 in #8
- fix bug with strategy != ‘Paired’ by @brentp in #18
- Add container for docker/singularity by @SPPearce in #14
- Template update for nf-core/tools version 2.14.1 by @nh13 in #30
- Fix duplicate line README.md by @nh13 in #32
- High throughput version of the best practices by @nh13 in #33
- doc: add fastquorum subway diagram by @nh13 in #34
- doc: update docs with more explanations by @nh13 in #36
- add support for samples to have multiple runs or lanes by @nh13 in #38
- Bump version to 1.0 by @nh13 in #41
- ci: update snapshots with 1.0.0 release by @nh13 in #43
- Suggestions by @SPPearce in #44
- Release 1.0.0 by @nh13 in #42
- release 1.0.0 post fixes by @nh13 in #48
- 1.0.0 redux by @nh13 in #49
New Contributors
- @nh13 made their first contribution in #5
- @brentp made their first contribution in #18
- @SPPearce made their first contribution in #14
Full Changelog: https://github.com/nf-core/fastquorum/commits/1.0.0
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open issues
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open PRs
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last release
15 days ago
last update
15 days ago
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