nf-core/fastquorum

Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)

consensusumiumisunique-molecular-identifier

Launch version 1.0.1 https://github.com/nf-core/fastquorum

Version history

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What’s Changed

docs: update subway diagrams by @nh13 in #51
updates post 1.0.0 release by @nh13 in #50
Add when conditions to prepare by @SPPearce in #58
Allow escalation of memory for FilterConsensusReads by @SPPearce in #60
fix: support when multiple value args can be a number or a comma-delimited string by @nh13 in #66
bugfix: merging lanes would result in an error by @nh13 in #68
Allow igenomes to work by @SPPearce in #67
chore: prepare for 1.0.1 release by @znorgaard in #69
Add stubs to all local modules by @SPPearce in #71
chore: correct date by @znorgaard in #75
chore: release 1.0.1 by @znorgaard in #70

New Contributors

@znorgaard made their first contribution in #69

Full Changelog: 1.0.0…1.0.1

Download .zip Download .tar.gz View on GitHub

What’s Changed

Fix missing code backtick in README by @nh13 in #5
rename fgcons to fastquorum by @nh13 in #6
[bugfix] fix missing samtools conda requirement by @nh13 in #7
Bugfix/make it work local by @nh13 in #8
fix bug with strategy != ‘Paired’ by @brentp in #18
Add container for docker/singularity by @SPPearce in #14
Template update for nf-core/tools version 2.14.1 by @nh13 in #30
Fix duplicate line README.md by @nh13 in #32
High throughput version of the best practices by @nh13 in #33
doc: add fastquorum subway diagram by @nh13 in #34
doc: update docs with more explanations by @nh13 in #36
add support for samples to have multiple runs or lanes by @nh13 in #38
Bump version to 1.0 by @nh13 in #41
ci: update snapshots with 1.0.0 release by @nh13 in #43
Suggestions by @SPPearce in #44
Release 1.0.0 by @nh13 in #42
release 1.0.0 post fixes by @nh13 in #48
1.0.0 redux by @nh13 in #49

New Contributors

@nh13 made their first contribution in #5
@brentp made their first contribution in #18
@SPPearce made their first contribution in #14

Full Changelog: https://github.com/nf-core/fastquorum/commits/1.0.0