Fixed

• #4 - Fix AWS testing with s3 bucket

Dependencies

• #6 sync with template 2.8

Fixed

• #4 - Fix AWS testing with s3 bucket
• missing zenodo in lib/
• added credit and provided short MARS-seq description

What’s Changed

• chore: update TEMPLATE version 2.8
• feat: stub testing
• fix: all bin scripts are now versioned
• fix: replace some internal modules with nf-core/modules
• doc: updated all the documentation with examples
• feat: CI/CD and AWS testing

Shout out to the contributors and reviewers, thank you.

• @maxulysse
• @JoseEspinosa
• @FriederikeHanssen

Full Changelog: v0.1…1.0.0

This tag a nf-core/marsseq pipeline which has been used in following publications:

• Rothova et al., 2022
• Perera et al., 2022
• Knudsen et al., 2023
• and few more in preparation