nf-core/metaboigniter

Pre-processing of mass spectrometry-based metabolomics data with quantification and identification based on MS1 and MS2 data.

identificationmass-spectrometrymetabolomicsms1ms2quantification

Launch version 1.0.1 https://github.com/nf-core/metaboigniter

Version history

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Minor patch release that includes:

Fixed running the pipeline on AWS.
Unused parameters were removed
Template has been updated to nf-core/tools v1.14

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The initial release of nf-core/metaboigniter pipeline.

This release includes:

IPO parameter tuning
mass trace detection using XCMS or OpenMS
Retention time alignment and grouping
Adduct and isotope detection
Noise filtering using QC stability, blank filtering, and dilution series
Metabolite identification using FINGER
, MetFrag, CFM-ID, and Internal library
Normalization and transformation

run with

See the docs on how to configure the Tower CLI.

video introduction

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1

last release

over 2 years ago

last update

over 2 years ago

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