nf-core/metatdenovo
Assembly and annotation of metatranscriptomic or metagenomic data for prokaryotic, eukaryotic and viruses.
eukaryotesmetagenomicsmetatranscriptomicsprokaryotesviruses
Version history
What’s Changed
- bump version by @danilodileo in https://github.com/nf-core/metatdenovo/pull/263
- Fix badges by @maxulysse in https://github.com/nf-core/metatdenovo/pull/264
- Don’t save unncessary megahit files by @erikrikarddaniel in https://github.com/nf-core/metatdenovo/pull/268
- Transdecoder bug by @danilodileo in https://github.com/nf-core/metatdenovo/pull/270
- Add spades options by @danilodileo in https://github.com/nf-core/metatdenovo/pull/272
- Merge in 1.0.1 by @erikrikarddaniel in https://github.com/nf-core/metatdenovo/pull/279
- Template update 2.13.1 manual config by @danilodileo in https://github.com/nf-core/metatdenovo/pull/278
- Bbnorm minid by @danilodileo in https://github.com/nf-core/metatdenovo/pull/282
- Update docs by @danilodileo in https://github.com/nf-core/metatdenovo/pull/283
- Nf test by @danilodileo in https://github.com/nf-core/metatdenovo/pull/285
- Add save formatspades option by @danilodileo in https://github.com/nf-core/metatdenovo/pull/286
- Template update 2.14.1 by @danilodileo in https://github.com/nf-core/metatdenovo/pull/290
- bump version by @danilodileo in https://github.com/nf-core/metatdenovo/pull/291
- Fix megahit memory by @erikrikarddaniel in https://github.com/nf-core/metatdenovo/pull/292
- Update output.md by @erikrikarddaniel in https://github.com/nf-core/metatdenovo/pull/295
- New diagram with labels by @danilodileo in https://github.com/nf-core/metatdenovo/pull/296
- Make eukulele count files optional by @erikrikarddaniel in https://github.com/nf-core/metatdenovo/pull/304
- Fixed mistake in last fix by @erikrikarddaniel in https://github.com/nf-core/metatdenovo/pull/305
- Template update3.1.1 by @danilodileo in https://github.com/nf-core/metatdenovo/pull/308
- Template update3.1.2 by @danilodileo in https://github.com/nf-core/metatdenovo/pull/310
- Update modules by @danilodileo in https://github.com/nf-core/metatdenovo/pull/311
- Diamond taxonomy by @erikrikarddaniel in https://github.com/nf-core/metatdenovo/pull/312
- Update modules by @danilodileo in https://github.com/nf-core/metatdenovo/pull/314
- Template update3.2.0 by @danilodileo in https://github.com/nf-core/metatdenovo/pull/318
- Update diamond tax by @erikrikarddaniel in https://github.com/nf-core/metatdenovo/pull/319
- Quick fix bbduk by @erikrikarddaniel in https://github.com/nf-core/metatdenovo/pull/321
- Parse taxstring by @erikrikarddaniel in https://github.com/nf-core/metatdenovo/pull/320
- Minor inconcistencies by @erikrikarddaniel in https://github.com/nf-core/metatdenovo/pull/323
- Minor inconcistencies 2 by @danilodileo in https://github.com/nf-core/metatdenovo/pull/325
- Improve overall stats, fix test_filter issue by @erikrikarddaniel in https://github.com/nf-core/metatdenovo/pull/326
- Fix passing of only one sample to BBDuk by @erikrikarddaniel in https://github.com/nf-core/metatdenovo/pull/328
- Update usage.md by @erikrikarddaniel in https://github.com/nf-core/metatdenovo/pull/330
- Update config demanging proj + add new nf-tests by @danilodileo in https://github.com/nf-core/metatdenovo/pull/331
- Modified tree structure by @danilodileo in https://github.com/nf-core/metatdenovo/pull/332
- Release fix 1.1.0 by @danilodileo in https://github.com/nf-core/metatdenovo/pull/333
- Update CHANGELOG.md by @danilodileo in https://github.com/nf-core/metatdenovo/pull/335
- Delete .nf-test.log by @danilodileo in https://github.com/nf-core/metatdenovo/pull/336
- stub run is working now by @danilodileo in https://github.com/nf-core/metatdenovo/pull/337
- Delete test_spades.nf.test by @danilodileo in https://github.com/nf-core/metatdenovo/pull/338
- Small fix by @danilodileo in https://github.com/nf-core/metatdenovo/pull/339
- Revert collect/stats a bit to reduce memory requirement by @erikrikarddaniel in https://github.com/nf-core/metatdenovo/pull/340
- Fix tests by @erikrikarddaniel in https://github.com/nf-core/metatdenovo/pull/341
- test to get rid of an error with gha by @danilodileo in https://github.com/nf-core/metatdenovo/pull/342
- fix tests by @danilodileo in https://github.com/nf-core/metatdenovo/pull/343
- Quick fix of
COLLECT_STATS
! by @erikrikarddaniel in https://github.com/nf-core/metatdenovo/pull/345 - Fix 2files by @erikrikarddaniel in https://github.com/nf-core/metatdenovo/pull/346
- update date for release by @danilodileo in https://github.com/nf-core/metatdenovo/pull/347
- Release v1.1.0 by @danilodileo in https://github.com/nf-core/metatdenovo/pull/334
New Contributors
- @maxulysse made their first contribution in https://github.com/nf-core/metatdenovo/pull/264
Full Changelog: https://github.com/nf-core/metatdenovo/compare/1.0.1…1.1.0
This release fixes two important bugs in 1.0.0:
- The
--eukulele_db
parameter did not work and gave syntax error. Besides fixing this issue, it is now not possible to use more than one database per run. - User provided assemblies specified with
--assembly
that were not gzipped were overwritten. This should now be fixed.
Release of nf-core/metatdenovo version 1.0.0