nf-core/modules
Browse the 1389 modules that are currently available as part of nf-core.
Screen assemblies for antimicrobial resistance against multiple databases
bacteriaassemblyantimicrobial resistance
Screen assemblies for antimicrobial resistance against multiple databases
bacteriaassemblyantimicrobial reistance
A NATA accredited tool for reporting the presence of antimicrobial resistance genes in bacterial genomes
bacteriafastaantibiotic resistance
Trim sequencing adapters and collapse overlapping reads
trimmingadaptersmergingfastq
Fixes prefixes from AdapterRemoval2 output to make sure no clashing read names are in the output. For use with DeDup.
adapterremovalfastqdedup
ADMIXTURE is a program for estimating ancestry in a model-based manner from large autosomal SNP genotype datasets, where the individuals are unrelated (for example, the individuals in a case-control association study).
ancestrypopulation geneticsadmixturereference panelsgwas
Read CEL files into an ExpressionSet and generate a matrix
affymicroarrayexpressionmatrix
Converts a GFF/GTF file into a proper GTF file
genomegffgtfconversion
Fixes and standardizes GFF/GTF files and outputs a cleaned GFF/GTF file
genomegffgtfconversion
Add intron features to gtf/gff file without intron features.
gtfgffintrons