Version history

Initial release of nf-core/proteinfamilies, created with the nf-core template.

Added

  • Amino acid sequence clustering (mmseqs)
  • Multiple sequence alignment (famsa, mafft, clipkit)
  • Hidden Markov Model generation (hmmer)
  • Between families redundancy removal (hmmer)
  • In-family sequence redundancy removal (mmseqs)
  • Family updating (hmmer, seqkit, mmseqs, famsa, mafft, clipkit)
  • Family statistics presentation (multiqc)

By @vagkaratzas and @mberacochea.