nf-core/proteinfamilies
Generation and update of protein families
metagenomicsprotein-familiesproteomics
Version history
Initial release of nf-core/proteinfamilies, created with the nf-core template.
Added
- Amino acid sequence clustering (mmseqs)
- Multiple sequence alignment (famsa, mafft, clipkit)
- Hidden Markov Model generation (hmmer)
- Between families redundancy removal (hmmer)
- In-family sequence redundancy removal (mmseqs)
- Family updating (hmmer, seqkit, mmseqs, famsa, mafft, clipkit)
- Family statistics presentation (multiqc)
By @vagkaratzas and @mberacochea.