Define where the pipeline should find input data and save output data.
Reference genome related files and options required for the workflow.
Options used to steer the direction of the pipeline.
Options to adjust parameters and filtering criteria for read alignments.
Options to adjust parameters and filtering criteria for variant calling.
Options used to facilitate the annotation of the variants.
Parameters used to describe centralised config profiles. These should not be edited.
Set the top limit for requested resources for any single job.
Less common options for the pipeline, typically set in a config file.