nf-core/reportho
nf-core pipeline for comparative analysis of ortholog predictions
Version history
This is a small patch to address two issues.
Fixed
- Structural alignment now uses correct channels.
- Reduced number of files in the output directory when
output_intermediatesis not enabled.
What’s Changed
- Patch release 1.0.1 by @itrujnara in #57
Full Changelog: 1.0.0…1.0.1
What’s Changed
- Created basic homepage, added tube map to docs by @itrujnara in #4
- Modularized database information, updated iqtree and fastme modules by @itrujnara in #5
- Finished report integration by @itrujnara in #6
- Added stats generation, added stats to the report by @itrujnara in #7
- Nextflow code cleanup/formatting by @itrujnara in #8
- New tube map by @itrujnara in #9
- Updated modules.config by @itrujnara in #10
- Multiple tweaks by @itrujnara in #13
- Add stub and update test by @JoseEspinosa in #16
- Bug fixes by @itrujnara in #18
- Preparation for release 1.0.0 by @itrujnara in #15
- Template merge v2.14.0 by @JoseEspinosa in #21
- Important! Template update for nf-core/tools v2.14.1 by @nf-core-bot in #24
- Added MultiQC by @itrujnara in #25
- Add validation for fasta input and tests by @JoseEspinosa in #20
- Added better request error handling by @itrujnara in #26
- Added light mode plots by @itrujnara in #27
- Added offline run flag and profile by @itrujnara in #29
- Update modules by @JoseEspinosa in #30
- Improved path handling in get_orthologs by @itrujnara in #31
- Fixed Venn diagram bug by @itrujnara in #32
- Fixed local OMA bug by @itrujnara in #33
- Bug fixes by @itrujnara in #34
- Revert to nf-validation, as nf-schema was not really used by @JoseEspinosa in #42
- Minor changes by @luisas in #41
- Replace grep with ripgrep for expensive searches by @itrujnara in #43
- Multiple fixes by @itrujnara in #45
- Get rid of custom images by @JoseEspinosa in #44
- Update how image is set for report by @JoseEspinosa in #47
- Bug fixes by @itrujnara in #46
- Some updates (see below) by @JoseEspinosa in #49
- Version bump and changelog by @itrujnara in #50
- Release review comments by @itrujnara in #52
- Chenged command in CONTRIBUTING.md by @itrujnara in #53
- Tube map tweak by @itrujnara in #54
- Fixed plots in the report, changed release date by @itrujnara in #55
- Release 1.0.0 by @itrujnara in #51
New Contributors
- @JoseEspinosa made their first contribution in #16
- @nf-core-bot made their first contribution in #24
- @luisas made their first contribution in #41
Full Changelog: https://github.com/nf-core/reportho/commits/1.0.0
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