main_nf

ModuleLint.main_nf(module: NFCoreComponent, fix_version: bool, registry: str, progress_bar: Progress) → Tuple[List[str], List[str]]

Lint a main.nf module file

Can also be used to lint local module files, in which case failures will be reported as warnings.

The test checks for the following:

• Software versions and containers are valid
• The module has a process label and it is among the standard ones.
• If a meta map is defined as one of the modules inputs it should be defined as one of the outputs, and be correctly configured in the saveAs function.
• The module script section should contain definitions of software and prefix