Define where the pipeline should find input data and save output data.
Options for the reference genome indices used to align reads.
Less common options for the pipeline, typically set in a config file.
Set the top limit for requested resources for any single job.
Parameters used to describe centralised config profiles. These should not be edited.
Use these parameters to also enable reproducible results from the individual assembly and binning tools .
Taxonomic classification is disabled by default. You have to specify one of the options below to activate it.